Which intake hose did you feed this into? If you want to clean the intake/combustion chamber, there is a product, I believe it is by 3M, that attaches to the schrader valve on the fuel rail and does this, but it costs about 150 with the attachments and you have to disable the fuel pump. It runs on the contents of the pressure bottle and then stops. I have never done what you describe, but I don't think there is a direct link any more between vacuum and transmission operation, it is all computerized and based on engine speed, temp, etc. So the most likely thing that happened, if it did happen exactly when you did the Seafoam deal, is that the stuff ran down the line the wrong way and got into a sensor or something else and damaged it. I would trace that vac line backwards to what ever it goes to and see if that is it. If it runs fine on full throttle cold, it could be you damaged the 02 sensor with gunk gumming it up. There is so much tarry crud in the plenums now, I believe from ethanol induced breakdown products, that I would consider it dangerous to melt all that crud in a short time and try to shoot it down the exhaust. If you were going to do something like you propose, I would pull the intake plenum first and clean it with mineral spirits, put it back on and try cleaning the intake ports with some product. Sorry for the problem.